openms-2.8.0-0.3.fc37 RPM for x86_64

From Fedora 37 for x86_64 / o

OpenMS is a C++ library for LC-MS data management and analyses.
It offers an infrastructure for the rapid development of mass spectrometry
related software. OpenMS is free software available under the three clause BSD
license and runs under Windows, MacOSX and Linux.

It comes with a vast variety of pre-built and ready-to-use tools for proteomics
and metabolomics data analysis (TOPPTools) and
powerful 2D and 3D visualization(TOPPView).

OpenMS offers analyses for various quantitation protocols,
including label-free quantitation, SILAC, iTRAQ, SRM, SWATH, etc.

It provides built-in algorithms for de-novo identification and database search,
as well as adapters to other state-of-the art tools like XTandem, Mascot,
OMSSA, etc.
It supports easy integration of OpenMS built tools into workflow engines like
Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept and
a unified parameter handling via a 'common tool description' (CTD) scheme.

The OpenMS Proteomics Pipeline is a pipeline for
the analysis of HPLC-MS data.
It consists of several small applications that
can be chained to create analysis pipelines tailored
for a specific problem.

The TOPP tools are divided into several subgroups:

 - Graphical Tools
 - File Handling
 - Signal Processing and Preprocessing
 - Quantitation
 - Map Alignment
 - Protein/Peptide Identification
 - Protein/Peptide Processing
 - Targeted Experiments
 - Peptide Property Prediction
 - Misc

Provides

• openms
• application()
• application(TOPPAS.desktop)
• application(TOPPView.desktop)
• application(inifileeditor.desktop)
• metainfo()
• metainfo(TOPPAS.appdata.xml)
• metainfo(TOPPView.appdata.xml)
• openms(x86-64)

Requires

• R-core(x86-64)
• ld-linux-x86-64.so.2()(64bit)
• ld-linux-x86-64.so.2(GLIBC_2.3)(64bit)
• libCbc.so.3()(64bit)
• libCgl.so.1()(64bit)
• libCoinUtils.so.3()(64bit)
• libOsiClp.so.1()(64bit)
• libQt5Core.so.5()(64bit)
• libQt5Core.so.5(Qt_5)(64bit)
• libQt5Core.so.5(Qt_5.15)(64bit)
• libQt5Gui.so.5()(64bit)
• libQt5Gui.so.5(Qt_5)(64bit)
• libQt5Network.so.5()(64bit)
• libQt5Network.so.5(Qt_5)(64bit)
• libQt5Sql.so.5()(64bit)
• libQt5Sql.so.5(Qt_5)(64bit)
• libQt5Svg.so.5()(64bit)
• libQt5Svg.so.5(Qt_5)(64bit)
• libQt5WebChannel.so.5()(64bit)
• libQt5WebChannel.so.5(Qt_5)(64bit)
• libQt5WebEngineWidgets.so.5()(64bit)
• libQt5WebEngineWidgets.so.5(Qt_5)(64bit)
• libQt5Widgets.so.5()(64bit)
• libQt5Widgets.so.5(Qt_5)(64bit)
• libWm5Mathematics.so.5()(64bit)
• libbz2.so.1()(64bit)
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.14)(64bit)
• libc.so.6(GLIBC_2.2.5)(64bit)
• libc.so.6(GLIBC_2.3.4)(64bit)
• libc.so.6(GLIBC_2.32)(64bit)
• libc.so.6(GLIBC_2.33)(64bit)
• libc.so.6(GLIBC_2.34)(64bit)
• libc.so.6(GLIBC_2.4)(64bit)
• libc.so.6(GLIBC_2.7)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libgcc_s.so.1(GCC_3.3.1)(64bit)
• libgcc_s.so.1(GCC_3.4)(64bit)
• libgomp.so.1()(64bit)
• libgomp.so.1(GOMP_1.0)(64bit)
• libgomp.so.1(GOMP_4.0)(64bit)
• libgomp.so.1(GOMP_4.5)(64bit)
• libgomp.so.1(OMP_1.0)(64bit)
• libgomp.so.1(OMP_3.0)(64bit)
• libhdf5.so.200()(64bit)
• libhdf5_cpp.so.200()(64bit)
• libm.so.6()(64bit)
• libm.so.6(GLIBC_2.2.5)(64bit)
• libm.so.6(GLIBC_2.23)(64bit)
• libm.so.6(GLIBC_2.27)(64bit)
• libm.so.6(GLIBC_2.29)(64bit)
• libsqlite3.so.0()(64bit)
• libstdc++.so.6()(64bit)
• libstdc++.so.6(CXXABI_1.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.11)(64bit)
• libstdc++.so.6(CXXABI_1.3.13)(64bit)
• libstdc++.so.6(CXXABI_1.3.2)(64bit)
• libstdc++.so.6(CXXABI_1.3.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.5)(64bit)
• libstdc++.so.6(CXXABI_1.3.8)(64bit)
• libstdc++.so.6(CXXABI_1.3.9)(64bit)
• libstdc++.so.6(GLIBCXX_3.4)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.14)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.15)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.18)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.19)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.22)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.26)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.29)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.30)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
• libsvm.so.3()(64bit)
• libxerces-c-3.2.so()(64bit)
• libz.so.1()(64bit)
• openms-data(x86-64) = 2.8.0-0.3.fc37
• percolator(x86-64)
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1
• rtld(GNU_HASH)

License

BSD

Changelog

* Thu Aug 18 2022 Jerry James <loganjerry@gmail.com> - 2.8.0-0.3
  - Rebuild for libsvm 3.3
* Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.8.0-0.2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Sat Mar 05 2022 Antonio Trande <sagitter@fedoraproject.org> - 2.8.0-0.1
  - Pre-release 2.8.0
  - Patched for GCC-12
  - ExclusiveArch qt5_qtwebengine_arches
* Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.7.0-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Sun Nov 28 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.7.0-2
  - Rebuild for hdf5 1.12.1
  - Disable Python binding
* Sat Sep 18 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.7.0-1
  - Release 2.7.0
  - Tests disabled
  - Use bundled seqan (optimized for OpenMS)
* Tue Aug 10 2021 Orion Poplawski <orion@nwra.com> - 2.6.0-11
  - Rebuild for hdf5 1.10.7
* Sat Aug 07 2021 Jonathan Wakely <jwakely@redhat.com> - 2.6.0-10
  - Rebuilt for Boost 1.76
* Thu Jul 22 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.6.0-9
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
* Tue Jun 22 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.6.0-8
  - Patched for upstream bug #5381
* Sat Jun 19 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.6.0-7
  - Release build
  - Enable Python binding (not in ARM and s390x)
  - Enable check
* Wed Feb 17 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.6.0-6
  - Filter private libraries
* Tue Feb 16 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.6.0-5
  - Remove fido-pi dependencies
* Tue Feb 02 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.6.0-4
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
  - Patch GLPK version
* Fri Jan 22 2021 Jonathan Wakely <jwakely@redhat.com> - 2.6.0-3
  - Rebuilt for Boost 1.75
* Sun Oct 25 2020 Antonio Trande <sagitter@fedoraproject.org> - 2.6.0-2
  - Avoid skipping rpaths
* Fri Oct 02 2020 Antonio Trande <sagitter@fedoraproject.org> - 2.6.0-1
  - Release 2.6.0

Files

/usr/bin/BaselineFilter
/usr/bin/CompNovo
/usr/bin/CompNovoCID
/usr/bin/ConsensusID
/usr/bin/ConsensusMapNormalizer
/usr/bin/DTAExtractor
/usr/bin/DatabaseFilter
/usr/bin/DatabaseSuitability
/usr/bin/Decharger
/usr/bin/EICExtractor
/usr/bin/ExecutePipeline
/usr/bin/FalseDiscoveryRate
/usr/bin/FeatureFinderCentroided
/usr/bin/FeatureFinderIdentification
/usr/bin/FeatureFinderIsotopeWavelet
/usr/bin/FeatureFinderMRM
/usr/bin/FeatureFinderMetabo
/usr/bin/FeatureFinderMultiplex
/usr/bin/FeatureLinkerLabeled
/usr/bin/FeatureLinkerUnlabeled
/usr/bin/FeatureLinkerUnlabeledKD
/usr/bin/FeatureLinkerUnlabeledQT
/usr/bin/FidoAdapter
/usr/bin/FileConverter
/usr/bin/FileInfo
/usr/bin/FileMerger
/usr/bin/GenericWrapper
/usr/bin/HighResPrecursorMassCorrector
/usr/bin/IDConflictResolver
/usr/bin/IDFileConverter
/usr/bin/IDFilter
/usr/bin/IDMapper
/usr/bin/IDMerger
/usr/bin/IDPosteriorErrorProbability
/usr/bin/IDRTCalibration
/usr/bin/IDRipper
/usr/bin/IDScoreSwitcher
/usr/bin/INIFileEditor
/usr/bin/InclusionExclusionListCreator
/usr/bin/InternalCalibration
/usr/bin/IsobaricAnalyzer
/usr/bin/LuciphorAdapter
/usr/bin/MRMMapper
/usr/bin/MRMTransitionGroupPicker
/usr/bin/MSGFPlusAdapter
/usr/bin/MapAlignerIdentification
/usr/bin/MapAlignerPoseClustering
/usr/bin/MapAlignerSpectrum
/usr/bin/MapNormalizer
/usr/bin/MapRTTransformer
/usr/bin/MapStatistics
/usr/bin/MascotAdapter
/usr/bin/MascotAdapterOnline
/usr/bin/MassTraceExtractor
/usr/bin/MetaProSIP
/usr/bin/MetaboliteSpectralMatcher
/usr/bin/MyriMatchAdapter
/usr/bin/MzMLSplitter
/usr/bin/MzTabExporter
/usr/bin/NoiseFilterGaussian
/usr/bin/NoiseFilterSGolay
/usr/bin/OMSSAAdapter
/usr/bin/OpenSwathAnalyzer
/usr/bin/OpenSwathAssayGenerator
/usr/bin/OpenSwathChromatogramExtractor
/usr/bin/OpenSwathConfidenceScoring
/usr/bin/OpenSwathDecoyGenerator
/usr/bin/OpenSwathFeatureXMLToTSV
/usr/bin/OpenSwathRTNormalizer
/usr/bin/OpenSwathWorkflow
/usr/bin/PTModel
/usr/bin/PTPredict
/usr/bin/PeakPickerHiRes
/usr/bin/PeakPickerIterative
/usr/bin/PeakPickerWavelet
/usr/bin/PepNovoAdapter
/usr/bin/PeptideIndexer
/usr/bin/PercolatorAdapter
/usr/bin/PrecursorIonSelector
/usr/bin/PrecursorMassCorrector
/usr/bin/ProteinInference
/usr/bin/ProteinQuantifier
/usr/bin/ProteinResolver
/usr/bin/RNPxlSearch
/usr/bin/RTModel
/usr/bin/RTPredict
/usr/bin/Resampler
/usr/bin/SeedListGenerator
/usr/bin/SimpleSearchEngine
/usr/bin/SpecLibSearcher
/usr/bin/SpectraFilterBernNorm
/usr/bin/SpectraFilterMarkerMower
/usr/bin/SpectraFilterNLargest
/usr/bin/SpectraFilterNormalizer
/usr/bin/SpectraFilterParentPeakMower
/usr/bin/SpectraFilterScaler
/usr/bin/SpectraFilterSqrtMower
/usr/bin/SpectraFilterThresholdMower
/usr/bin/SpectraFilterWindowMower
/usr/bin/SpectraMerger
/usr/bin/StaticModification
/usr/bin/SwathWizard
/usr/bin/TOFCalibration
/usr/bin/TOPPAS
/usr/bin/TOPPView
/usr/bin/TextExporter
/usr/bin/XTandemAdapter
/usr/lib/.build-id
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Fabrice Bellet, Tue Apr 9 20:33:48 2024