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biopython-tools-1.52-1mdv2010.0 RPM for x86_64

From Mandriva 2010.0 for x86_64 / media / contrib / release

Name: biopython-tools Distribution: Mandriva Linux
Version: 1.52 Vendor: Mandriva
Release: 1mdv2010.0 Build date: Wed Sep 23 01:36:22 2009
Group: Sciences/Biology Build host: klodia.mandriva.com
Size: 10455641 Source RPM: biopython-1.52-1mdv2010.0.src.rpm
Packager: Lev Givon <lev@mandriva.org>
Url: http://biopython.org/
Summary: Regression testing code and miscellaneous standalone scripts
This package provides various scripts and tests that are comprised by the
Biopython Project.

Provides

Requires

License

BSD

Changelog

* Thu Sep 24 2009 Lev Givon <lev@mandriva.org> 1:1.52-1mdv2010.0
  + Revision: 447573
  - Update to 1.52.
* Tue Aug 18 2009 Lev Givon <lev@mandriva.org> 1:1.51-1mdv2010.0
  + Revision: 417346
  - Update to 1.51.
* Wed Apr 22 2009 Lev Givon <lev@mandriva.org> 1:1.50-1mdv2010.0
  + Revision: 368591
  - Update to 1.50.
* Thu Dec 25 2008 Funda Wang <fundawang@mandriva.org> 1:1.49-4mdv2009.1
  + Revision: 318982
  - fix file list
  - rebuild for new python
* Fri Dec 19 2008 Lev Givon <lev@mandriva.org> 1:1.49-3mdv2009.1
  + Revision: 316314
  - Fix python-BioSQL requirements.
* Fri Dec 12 2008 Lev Givon <lev@mandriva.org> 1:1.49-2mdv2009.1
  + Revision: 313641
  - Fix provides/requires to include epoch.
* Tue Dec 02 2008 Lev Givon <lev@mandriva.org> 1:1.49-1mdv2009.1
  + Revision: 309262
  - Update to 1.49.
    Update dependencies.
* Sun Nov 09 2008 Lev Givon <lev@mandriva.org> 1.49b-1mdv2009.1
  + Revision: 301624
  - Update to 1.49b.
* Tue Sep 16 2008 Lev Givon <lev@mandriva.org> 1.47-2mdv2009.0
  + Revision: 284834
  - Make doc fix really work.
* Tue Sep 09 2008 Lev Givon <lev@mandriva.org> 1.47-1mdv2009.0
  + Revision: 282429
  - Fix busted Tutorial.pdf.
    Don't include doc making files.
  - Update to 1.47.
* Thu Jul 24 2008 Thierry Vignaud <tvignaud@mandriva.com> 1.44-3mdv2009.0
  + Revision: 243315
  - rebuild
* Thu Feb 07 2008 Gaëtan Lehmann <glehmann@mandriva.org> 1.44-1mdv2008.1
  + Revision: 163691
  - 1.44
  
    + Olivier Blin <oblin@mandriva.com>
      - restore BuildRoot
  
    + Thierry Vignaud <tvignaud@mandriva.com>
      - kill re-definition of %buildroot on Pixel's request
* Tue Aug 28 2007 Gaëtan Lehmann <glehmann@mandriva.org> 1.43-1mdv2008.0
  + Revision: 72168
  - 1.43
* Wed Jan 31 2007 Nicolas Lécureuil <neoclust@mandriva.org> 1.42-2mdv2007.0
  + Revision: 115728
  - Rebuild against new python
  - Import biopython
* Sat Aug 12 2006 glehmann
  + 08/10/06 17:59:58 (55453)
  update to 1.42
* Tue Aug 01 2006 glehmann
  + 07/30/06 09:51:44 (42642)
  Import biopython
* Sat Jul 02 2005 Gaetan Lehmann <gaetan.lehmann@jouy.inra.fr> 1.40-0.20050420.3mdk
  - rename packages
* Tue May 24 2005 Gaetan Lehmann <glehmann@n4.mandrakesoft.com> 1.40-0.20050420.2mdk
  - add missing buildrequires
* Fri Apr 22 2005 Gaetan Lehmann <glehmann@n4.mandrakesoft.com> 1.40-0.20050420.1mdk
  - cvs update
  - use mkrel
* Sat Apr 02 2005 Gaetan Lehmann <glehmann@n4.mandrakesoft.com> 1.40-0.20050331.1mdk
  - cvs update
* Sun Mar 20 2005 Gaetan Lehmann <glehmann@n4.mandrakesoft.com> 1.40-0.cvs20050320.1mdk
  - cvs update
* Sun Mar 06 2005 Gaetan Lehmann <gaetan.lehmann@jouy.inra.fr> 1.40-0.cvs20050306.1mdk
  - cvs update
* Tue Feb 22 2005 Gaetan Lehmann <gaetan.lehmann@jouy.inra.fr> 1.40-0.cvs20050222.1mdk
  - cvs update
* Thu Feb 17 2005 Gaetan Lehmann <gaetan.lehmann@jouy.inra.fr> 1.40-0.cvs20050217.1mdk
  - cvs update
  - add build section
  - fix some lint
* Tue Feb 15 2005 Gaetan Lehmann <gaetan.lehmann@jouy.inra.fr> 1.40-0.cvs20050215.1mdk
  - 1.40 cvs
* Thu Feb 10 2005 Gaetan Lehmann <gaetan.lehmann@jouy.inra.fr> 1.30-3mdk 
  - patch for python 2.4 (from freshports.org)
  - fix path for python 2.4
  - add api
  - fix some lints
* Sun Oct 17 2004 Michael Scherer <misc@mandrake.org> 1.30-2mdk 
  - fix Requires, #12092
  - fix BuildRequires
* Thu Sep 02 2004 Lenny Cartier <lenny@mandrakesoft.com> 1.30-1mdk
  - from Gaetan Lehmann <glehmann@netcourrier.com> :
  	- Create package from scratch for mandrake system

Files

/usr/share/biopython-1.52/Scripts
/usr/share/biopython-1.52/Scripts/GenBank
/usr/share/biopython-1.52/Scripts/GenBank/check_output.py
/usr/share/biopython-1.52/Scripts/GenBank/check_output_simple.py
/usr/share/biopython-1.52/Scripts/GenBank/find_parser_problems.py
/usr/share/biopython-1.52/Scripts/Index
/usr/share/biopython-1.52/Scripts/Index/indexing_ex.py
/usr/share/biopython-1.52/Scripts/Performance
/usr/share/biopython-1.52/Scripts/Performance/biocorba_performance_client.py
/usr/share/biopython-1.52/Scripts/Performance/biocorba_sql_server.py
/usr/share/biopython-1.52/Scripts/Performance/biosql_performanace_load.py
/usr/share/biopython-1.52/Scripts/Performance/biosql_performance_read.py
/usr/share/biopython-1.52/Scripts/Registry
/usr/share/biopython-1.52/Scripts/Registry/biocorba_db_ex.py
/usr/share/biopython-1.52/Scripts/Registry/biosql_db_ex.py
/usr/share/biopython-1.52/Scripts/Registry/indexed_db_ex.py
/usr/share/biopython-1.52/Scripts/Registry/register_db_ex.py
/usr/share/biopython-1.52/Scripts/Registry/use_cgi_db.py
/usr/share/biopython-1.52/Scripts/Restriction
/usr/share/biopython-1.52/Scripts/Restriction/ranacompiler.py
/usr/share/biopython-1.52/Scripts/Restriction/rebase_update.py
/usr/share/biopython-1.52/Scripts/SeqGui
/usr/share/biopython-1.52/Scripts/SeqGui/SeqGui.py
/usr/share/biopython-1.52/Scripts/Structure
/usr/share/biopython-1.52/Scripts/Structure/hsexpo
/usr/share/biopython-1.52/Scripts/debug
/usr/share/biopython-1.52/Scripts/debug/debug_blast_parser.py
/usr/share/biopython-1.52/Scripts/debug/test_db_registry.py
/usr/share/biopython-1.52/Scripts/query_pubmed.py
/usr/share/biopython-1.52/Scripts/scop_pdb.py
/usr/share/biopython-1.52/Scripts/xbbtools
/usr/share/biopython-1.52/Scripts/xbbtools/README
/usr/share/biopython-1.52/Scripts/xbbtools/nextorf.py
/usr/share/biopython-1.52/Scripts/xbbtools/test.fas
/usr/share/biopython-1.52/Scripts/xbbtools/testrp.fas
/usr/share/biopython-1.52/Scripts/xbbtools/xbb_blast.py
/usr/share/biopython-1.52/Scripts/xbbtools/xbb_blastbg.py
/usr/share/biopython-1.52/Scripts/xbbtools/xbb_help.py
/usr/share/biopython-1.52/Scripts/xbbtools/xbb_io.py
/usr/share/biopython-1.52/Scripts/xbbtools/xbb_search.py
/usr/share/biopython-1.52/Scripts/xbbtools/xbb_sequence.py
/usr/share/biopython-1.52/Scripts/xbbtools/xbb_translations.py
/usr/share/biopython-1.52/Scripts/xbbtools/xbb_utils.py
/usr/share/biopython-1.52/Scripts/xbbtools/xbb_widget.py
/usr/share/biopython-1.52/Scripts/xbbtools/xbbtools.py
/usr/share/biopython-1.52/Tests
/usr/share/biopython-1.52/Tests/Ace
/usr/share/biopython-1.52/Tests/Ace/consed_sample.ace
/usr/share/biopython-1.52/Tests/Ace/contig1.ace
/usr/share/biopython-1.52/Tests/Ace/seq.cap.ace
/usr/share/biopython-1.52/Tests/Amino
/usr/share/biopython-1.52/Tests/Amino/aster.pro
/usr/share/biopython-1.52/Tests/Amino/loveliesbleeding.pro
/usr/share/biopython-1.52/Tests/Amino/rose.pro
/usr/share/biopython-1.52/Tests/Amino/rosemary.pro
/usr/share/biopython-1.52/Tests/BioSQL
/usr/share/biopython-1.52/Tests/BioSQL/biosqldb-mysql.sql
/usr/share/biopython-1.52/Tests/BioSQL/biosqldb-pg.sql
/usr/share/biopython-1.52/Tests/Blast
/usr/share/biopython-1.52/Tests/Blast/README
/usr/share/biopython-1.52/Tests/Blast/blastp_no_hits.xml
/usr/share/biopython-1.52/Tests/Blast/bt001
/usr/share/biopython-1.52/Tests/Blast/bt002
/usr/share/biopython-1.52/Tests/Blast/bt003
/usr/share/biopython-1.52/Tests/Blast/bt004
/usr/share/biopython-1.52/Tests/Blast/bt005
/usr/share/biopython-1.52/Tests/Blast/bt006
/usr/share/biopython-1.52/Tests/Blast/bt007
/usr/share/biopython-1.52/Tests/Blast/bt009
/usr/share/biopython-1.52/Tests/Blast/bt010
/usr/share/biopython-1.52/Tests/Blast/bt011
/usr/share/biopython-1.52/Tests/Blast/bt012
/usr/share/biopython-1.52/Tests/Blast/bt013
/usr/share/biopython-1.52/Tests/Blast/bt014
/usr/share/biopython-1.52/Tests/Blast/bt015
/usr/share/biopython-1.52/Tests/Blast/bt016
/usr/share/biopython-1.52/Tests/Blast/bt017
/usr/share/biopython-1.52/Tests/Blast/bt018
/usr/share/biopython-1.52/Tests/Blast/bt019
/usr/share/biopython-1.52/Tests/Blast/bt020
/usr/share/biopython-1.52/Tests/Blast/bt021
/usr/share/biopython-1.52/Tests/Blast/bt022
/usr/share/biopython-1.52/Tests/Blast/bt023
/usr/share/biopython-1.52/Tests/Blast/bt024
/usr/share/biopython-1.52/Tests/Blast/bt025
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/usr/share/biopython-1.52/Tests/Blast/bt027
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/usr/share/biopython-1.52/Tests/Blast/bt071
/usr/share/biopython-1.52/Tests/Blast/bt100
/usr/share/biopython-1.52/Tests/Blast/bt101
/usr/share/biopython-1.52/Tests/Blast/bt102
/usr/share/biopython-1.52/Tests/Blast/bt103
/usr/share/biopython-1.52/Tests/Blast/bt104
/usr/share/biopython-1.52/Tests/Blast/bt105
/usr/share/biopython-1.52/Tests/Blast/xbt001.xml
/usr/share/biopython-1.52/Tests/Blast/xbt002.xml
/usr/share/biopython-1.52/Tests/Blast/xbt003.xml
/usr/share/biopython-1.52/Tests/Blast/xbt004.xml
/usr/share/biopython-1.52/Tests/Blast/xbt005.xml
/usr/share/biopython-1.52/Tests/Blast/xbt006.xml
/usr/share/biopython-1.52/Tests/Blast/xbt007.xml
/usr/share/biopython-1.52/Tests/Clustalw
/usr/share/biopython-1.52/Tests/Clustalw/cw02.aln
/usr/share/biopython-1.52/Tests/Clustalw/hedgehog.aln
/usr/share/biopython-1.52/Tests/Clustalw/odd_consensus.aln
/usr/share/biopython-1.52/Tests/Clustalw/opuntia.aln
/usr/share/biopython-1.52/Tests/Clustalw/promals3d.aln
/usr/share/biopython-1.52/Tests/Clustalw/protein.aln
/usr/share/biopython-1.52/Tests/CodonUsage
/usr/share/biopython-1.52/Tests/CodonUsage/HighlyExpressedGenes.txt
/usr/share/biopython-1.52/Tests/Compass
/usr/share/biopython-1.52/Tests/Compass/comtest1
/usr/share/biopython-1.52/Tests/Compass/comtest2
/usr/share/biopython-1.52/Tests/EMBL
/usr/share/biopython-1.52/Tests/EMBL/AAA03323.embl
/usr/share/biopython-1.52/Tests/EMBL/AE017046.embl
/usr/share/biopython-1.52/Tests/EMBL/DD231055_edited.embl
/usr/share/biopython-1.52/Tests/EMBL/SC10H5.embl
/usr/share/biopython-1.52/Tests/EMBL/TRBG361.embl
/usr/share/biopython-1.52/Tests/EMBL/U87107.embl
/usr/share/biopython-1.52/Tests/Emboss
/usr/share/biopython-1.52/Tests/Emboss/alignret.txt
/usr/share/biopython-1.52/Tests/Emboss/bac_find.primer3
/usr/share/biopython-1.52/Tests/Emboss/bac_find.psearch
/usr/share/biopython-1.52/Tests/Emboss/cds_forward.primer3
/usr/share/biopython-1.52/Tests/Emboss/cds_reverse.primer3
/usr/share/biopython-1.52/Tests/Emboss/internal_oligo.primer3
/usr/share/biopython-1.52/Tests/Emboss/needle.txt
/usr/share/biopython-1.52/Tests/Emboss/needle_asis.txt
/usr/share/biopython-1.52/Tests/Emboss/short.primer3
/usr/share/biopython-1.52/Tests/Emboss/water.txt
/usr/share/biopython-1.52/Tests/Emboss/water2.txt
/usr/share/biopython-1.52/Tests/Entrez
/usr/share/biopython-1.52/Tests/Entrez/egquery1.xml
/usr/share/biopython-1.52/Tests/Entrez/egquery2.xml
/usr/share/biopython-1.52/Tests/Entrez/einfo1.xml
/usr/share/biopython-1.52/Tests/Entrez/einfo2.xml
/usr/share/biopython-1.52/Tests/Entrez/elink1.xml
/usr/share/biopython-1.52/Tests/Entrez/elink2.xml
/usr/share/biopython-1.52/Tests/Entrez/elink3.xml
/usr/share/biopython-1.52/Tests/Entrez/elink4.xml
/usr/share/biopython-1.52/Tests/Entrez/elink5.xml
/usr/share/biopython-1.52/Tests/Entrez/elink6.xml
/usr/share/biopython-1.52/Tests/Entrez/elink7.xml
/usr/share/biopython-1.52/Tests/Entrez/elink8.xml
/usr/share/biopython-1.52/Tests/Entrez/elink9.xml
/usr/share/biopython-1.52/Tests/Entrez/epost1.xml
/usr/share/biopython-1.52/Tests/Entrez/epost2.xml
/usr/share/biopython-1.52/Tests/Entrez/epost3.xml
/usr/share/biopython-1.52/Tests/Entrez/esearch1.xml
/usr/share/biopython-1.52/Tests/Entrez/esearch2.xml
/usr/share/biopython-1.52/Tests/Entrez/esearch3.xml
/usr/share/biopython-1.52/Tests/Entrez/esearch4.xml
/usr/share/biopython-1.52/Tests/Entrez/esearch5.xml
/usr/share/biopython-1.52/Tests/Entrez/esearch6.xml
/usr/share/biopython-1.52/Tests/Entrez/esearch7.xml
/usr/share/biopython-1.52/Tests/Entrez/esearch8.xml
/usr/share/biopython-1.52/Tests/Entrez/espell.xml
/usr/share/biopython-1.52/Tests/Entrez/esummary1.xml
/usr/share/biopython-1.52/Tests/Entrez/esummary2.xml
/usr/share/biopython-1.52/Tests/Entrez/esummary3.xml
/usr/share/biopython-1.52/Tests/Entrez/esummary4.xml
/usr/share/biopython-1.52/Tests/Entrez/esummary5.xml
/usr/share/biopython-1.52/Tests/Entrez/esummary6.xml
/usr/share/biopython-1.52/Tests/Entrez/esummary7.xml
/usr/share/biopython-1.52/Tests/Entrez/esummary8.xml
/usr/share/biopython-1.52/Tests/Entrez/ncbi_mim.xml
/usr/share/biopython-1.52/Tests/Entrez/nucleotide1.xml
/usr/share/biopython-1.52/Tests/Entrez/nucleotide2.xml
/usr/share/biopython-1.52/Tests/Entrez/protein.xml
/usr/share/biopython-1.52/Tests/Entrez/pubmed1.xml
/usr/share/biopython-1.52/Tests/Entrez/pubmed2.xml
/usr/share/biopython-1.52/Tests/Entrez/serialset.xml
/usr/share/biopython-1.52/Tests/Entrez/taxonomy.xml
/usr/share/biopython-1.52/Tests/Enzymes
/usr/share/biopython-1.52/Tests/Enzymes/lactate.txt
/usr/share/biopython-1.52/Tests/Enzymes/lipoprotein.txt
/usr/share/biopython-1.52/Tests/Enzymes/proline.txt
/usr/share/biopython-1.52/Tests/Enzymes/valine.txt
/usr/share/biopython-1.52/Tests/FSSP
/usr/share/biopython-1.52/Tests/FSSP/1cnv.fssp
/usr/share/biopython-1.52/Tests/Fasta
/usr/share/biopython-1.52/Tests/Fasta/README
/usr/share/biopython-1.52/Tests/Fasta/f001
/usr/share/biopython-1.52/Tests/Fasta/f002
/usr/share/biopython-1.52/Tests/Fasta/f003
/usr/share/biopython-1.52/Tests/Fasta/fa01
/usr/share/biopython-1.52/Tests/Fasta/output001.m10
/usr/share/biopython-1.52/Tests/Fasta/output002.m10
/usr/share/biopython-1.52/Tests/Fasta/output003.m10
/usr/share/biopython-1.52/Tests/Fasta/output004.m10
/usr/share/biopython-1.52/Tests/Fasta/output005.m10
/usr/share/biopython-1.52/Tests/Fasta/output006.m10
/usr/share/biopython-1.52/Tests/GFF
/usr/share/biopython-1.52/Tests/GFF/NC_001422.gbk
/usr/share/biopython-1.52/Tests/GFF/NC_001802.fna
/usr/share/biopython-1.52/Tests/GFF/NC_001802lc.fna
/usr/share/biopython-1.52/Tests/GFF/NC_001802x.fna
/usr/share/biopython-1.52/Tests/GFF/multi.fna
/usr/share/biopython-1.52/Tests/GenBank
/usr/share/biopython-1.52/Tests/GenBank/NC_000932.faa
/usr/share/biopython-1.52/Tests/GenBank/NC_000932.gb
/usr/share/biopython-1.52/Tests/GenBank/NC_005816.faa
/usr/share/biopython-1.52/Tests/GenBank/NC_005816.ffn
/usr/share/biopython-1.52/Tests/GenBank/NC_005816.fna
/usr/share/biopython-1.52/Tests/GenBank/NC_005816.gb
/usr/share/biopython-1.52/Tests/GenBank/NT_019265.gb
/usr/share/biopython-1.52/Tests/GenBank/arab1.gb
/usr/share/biopython-1.52/Tests/GenBank/blank_seq.gb
/usr/share/biopython-1.52/Tests/GenBank/cor6_6.gb
/usr/share/biopython-1.52/Tests/GenBank/dbsource_wrap.gb
/usr/share/biopython-1.52/Tests/GenBank/extra_keywords.gb
/usr/share/biopython-1.52/Tests/GenBank/gbvrl1_start.seq
/usr/share/biopython-1.52/Tests/GenBank/iro.gb
/usr/share/biopython-1.52/Tests/GenBank/noref.gb
/usr/share/biopython-1.52/Tests/GenBank/one_of.gb
/usr/share/biopython-1.52/Tests/GenBank/origin_line.gb
/usr/share/biopython-1.52/Tests/GenBank/pBAD30.gb
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Fabrice Bellet, Thu Jul 10 09:54:06 2014