mmseq-0.9.14-1.fc15 RPM for x86_64

From Fedora 15 updates for x86_64

Software for fast, scalable haplotype and isoform expression
estimation using multi-mapping RNA-seq reads.  Example scripts are included.

Provides

• mmseq
• mmseq(x86-64)

Requires

• /bin/bash
• /usr/bin/env
• libbam.so.1()(64bit)
• libboost_regex.so.1.46.0()(64bit)
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.14)(64bit)
• libc.so.6(GLIBC_2.2.5)(64bit)
• libc.so.6(GLIBC_2.3)(64bit)
• libc.so.6(GLIBC_2.3.4)(64bit)
• libc.so.6(GLIBC_2.4)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit) <=
• libgomp.so.1()(64bit)
• libgomp.so.1(GOMP_1.0)(64bit) <
• libgomp.so.1(OMP_1.0)(64bit) <
• libgsl.so.0()(64bit)
• libgslcblas.so.0()(64bit)
• libm.so.6()(64bit) >
• libm.so.6(GLIBC_2.2.5)(64bit) >
• libpthread.so.0()(64bit) >
• libpthread.so.0(GLIBC_2.2.5)(64bit) <=
• libstdc++.so.6()(64bit) >=
• libstdc++.so.6(CXXABI_1.3)(64bit) <
• libstdc++.so.6(GLIBCXX_3.4)(64bit) >=
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit) <
• libstdc++.so.6(GLIBCXX_3.4.15)(64bit) <
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit) <
• perl >= 0:5.006
• perl(strict) <
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rtld(GNU_HASH)
• ruby <=
• samtools
• rpmlib(PayloadIsXz) >= 5.2-1

License

GPLv2+

Changelog

* Fri Oct 07 2011 Adam Huffman <bloch@verdurin.com> - 0.9.14-1
  - new upstream bugfix release
* Wed Aug 17 2011 Adam Huffman <bloch@verdurin.com> - 0.9.12-1
  - upstream release 0.9.12 fixing a possible segfault
* Thu Jul 21 2011 Adam Huffman <bloch@verdurin.com> - 0.9.11-2
  - rebuild for new Boost in Rawhide
* Sat May 28 2011 Adam Huffman <bloch@verdurin.com> - 0.9.11-1
  - new upstream release
  - add routeB.sh script
  - sam2hits.rb removed
* Fri May 27 2011 Adam Huffman <bloch@verdurin.com> - 0.9.10b-3
  - patch to deal with zlib better
* Sun May 15 2011 Adam Huffman <bloch@verdurin.com> - 0.9.10b-2
  - remove bundled binaries
  - remove VERSION
  - explicit naming for included scripts
* Sun May 08 2011 Adam Huffman <bloch@verdurin.com> - 0.9.10b-1
  - new upstream version
  - patch descriptions
* Sun May 08 2011 Adam Huffman <bloch@verdurin.com> - 0.9.9-3
  - fix permissions for installed files
  - include missing Perl script
  - improve description
* Sat Apr 09 2011 Adam Huffman <bloch@verdurin.com> - 0.9.9-2
  - fix compilation flags for debuginfo
  - include shell and Ruby scripts
* Mon Apr 04 2011 Adam Huffman <bloch@verdurin.com> - 0.9.9-1
  - initial version

Files

/usr/bin/bam2hits
/usr/bin/ensembl_gtf_to_gff.pl
/usr/bin/fastagrep.sh
/usr/bin/filterGTF.rb
/usr/bin/get_isize.rb
/usr/bin/haploref.rb
/usr/bin/mmseq
/usr/bin/pileup.sh
/usr/bin/routeB.sh
/usr/bin/testregexp.rb
/usr/share/doc/mmseq-0.9.14
/usr/share/doc/mmseq-0.9.14/AUTHORS
/usr/share/doc/mmseq-0.9.14/COPYING

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Fabrice Bellet, Mon Jun 10 07:06:21 2013