bowtie-0.12.7-2.fc15 RPM for i686

From Fedora 15 updates for i386

Bowtie, an ultrafast, memory-efficient short read aligner for short
DNA sequences (reads) from next-gen sequencers. Please cite: Langmead
B, et al. Ultrafast and memory-efficient alignment of short DNA
sequences to the human genome. Genome Biol 10:R25.

Provides

• bowtie
• bowtie(x86-32)

Requires

• /bin/sh
• /usr/bin/perl <
• libc.so.6
• libc.so.6(GLIBC_2.0) <=
• libc.so.6(GLIBC_2.1) <=
• libc.so.6(GLIBC_2.1.3)
• libc.so.6(GLIBC_2.2)
• libc.so.6(GLIBC_2.3.4)
• libc.so.6(GLIBC_2.4) <=
• libgcc_s.so.1
• libgcc_s.so.1(GCC_3.0)
• libm.so.6 <=
• libm.so.6(GLIBC_2.0) <
• libpthread.so.0 <
• libpthread.so.0(GLIBC_2.0) <
• libpthread.so.0(GLIBC_2.1)
• libpthread.so.0(GLIBC_2.2) <
• libstdc++.so.6 <
• libstdc++.so.6(CXXABI_1.3) =
• libstdc++.so.6(GLIBCXX_3.4) =
• libstdc++.so.6(GLIBCXX_3.4.11) <=
• libstdc++.so.6(GLIBCXX_3.4.9) <
• perl(FindBin)
• perl(Getopt::Long)
• perl(List::Util) <
• perl(strict) <
• perl(warnings) =
• rpmlib(CompressedFileNames)
• rpmlib(FileDigests) > 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) = 4.0-1
• rtld(GNU_HASH) <=
• rpmlib(PayloadIsXz) < 5.2-1

License

Artistic 2.0

Changelog

* Mon Jun 27 2011 Adam Huffman <bloch@verdurin.com> - 0.12.7-2
  - add missing doc/ 
  - add patch to fix Perl script without shebang
* Mon Sep 13 2010 Adam Huffman <bloch@verdurin.com> - 0.12.7-1
  - new upstream release 0.12.7
  - changelog at http://bowtie-bio.sourceforge.net/index.shtml
* Tue Aug 31 2010 Adam Huffman <bloch@verdurin.com> - 0.12.5-3
  - really fix compilation flags
* Wed Aug 25 2010 Adam Huffman <bloch@verdurin.com> - 0.12.5-2
  - fix compilation flags
* Mon Aug 02 2010 Adam Huffman <bloch@verdurin.com> - 0.12.5-1
  - initial version

Files

/usr/bin/bowtie
/usr/bin/bowtie-build
/usr/bin/bowtie-inspect
/usr/share/bowtie
/usr/share/bowtie/genomes
/usr/share/bowtie/genomes/NC_008253.fna
/usr/share/bowtie/indexes
/usr/share/bowtie/indexes/e_coli.1.ebwt
/usr/share/bowtie/indexes/e_coli.2.ebwt
/usr/share/bowtie/indexes/e_coli.3.ebwt
/usr/share/bowtie/indexes/e_coli.4.ebwt
/usr/share/bowtie/indexes/e_coli.README
/usr/share/bowtie/indexes/e_coli.rev.1.ebwt
/usr/share/bowtie/indexes/e_coli.rev.2.ebwt
/usr/share/bowtie/reads
/usr/share/bowtie/reads/e_coli_1000.fa
/usr/share/bowtie/reads/e_coli_1000.fq
/usr/share/bowtie/reads/e_coli_1000.raw
/usr/share/bowtie/reads/e_coli_10000snp.fa
/usr/share/bowtie/reads/e_coli_10000snp.fq
/usr/share/bowtie/reads/e_coli_1000_1.fa
/usr/share/bowtie/reads/e_coli_1000_1.fq
/usr/share/bowtie/reads/e_coli_1000_2.fa
/usr/share/bowtie/reads/e_coli_1000_2.fq
/usr/share/bowtie/scripts
/usr/share/bowtie/scripts/best_verify.pl
/usr/share/bowtie/scripts/bs_mapability.pl
/usr/share/bowtie/scripts/build_test.sh
/usr/share/bowtie/scripts/colorize_fasta.pl
/usr/share/bowtie/scripts/colorize_fastq.pl
/usr/share/bowtie/scripts/convert_quals.pl
/usr/share/bowtie/scripts/fastq_to_tabbed.pl
/usr/share/bowtie/scripts/gen_2b_occ_lookup.pl
/usr/share/bowtie/scripts/gen_dnamasks2colormask.pl
/usr/share/bowtie/scripts/gen_occ_lookup.pl
/usr/share/bowtie/scripts/gen_solqual_lookup.pl
/usr/share/bowtie/scripts/make_a_thaliana_tair.sh
/usr/share/bowtie/scripts/make_b_taurus_UMD3.sh
/usr/share/bowtie/scripts/make_c_elegans_ws200.sh
/usr/share/bowtie/scripts/make_canFam2.sh
/usr/share/bowtie/scripts/make_d_melanogaster_fb5_22.sh
/usr/share/bowtie/scripts/make_e_coli.sh
/usr/share/bowtie/scripts/make_galGal3.sh
/usr/share/bowtie/scripts/make_h_sapiens_ncbi36.sh
/usr/share/bowtie/scripts/make_h_sapiens_ncbi37.sh
/usr/share/bowtie/scripts/make_hg18.sh
/usr/share/bowtie/scripts/make_hg19.sh
/usr/share/bowtie/scripts/make_m_musculus_ncbi37.sh
/usr/share/bowtie/scripts/make_mm8.sh
/usr/share/bowtie/scripts/make_mm9.sh
/usr/share/bowtie/scripts/make_rn4.sh
/usr/share/bowtie/scripts/make_s_cerevisiae.sh
/usr/share/bowtie/scripts/mapability.pl
/usr/share/bowtie/scripts/pe_verify.pl
/usr/share/bowtie/scripts/random_bowtie_tests.pl
/usr/share/bowtie/scripts/random_bowtie_tests.sh
/usr/share/bowtie/scripts/random_bowtie_tests_p.sh
/usr/share/bowtie/scripts/reconcile_alignments.pl
/usr/share/bowtie/scripts/reconcile_alignments_pe.pl
/usr/share/bowtie/scripts/test.pl
/usr/share/doc/bowtie-0.12.7
/usr/share/doc/bowtie-0.12.7/AUTHORS
/usr/share/doc/bowtie-0.12.7/MANUAL
/usr/share/doc/bowtie-0.12.7/NEWS
/usr/share/doc/bowtie-0.12.7/TUTORIAL
/usr/share/doc/bowtie-0.12.7/VERSION
/usr/share/doc/bowtie-0.12.7/doc
/usr/share/doc/bowtie-0.12.7/doc/README
/usr/share/doc/bowtie-0.12.7/doc/manual.html
/usr/share/doc/bowtie-0.12.7/doc/strip_markdown.pl
/usr/share/doc/bowtie-0.12.7/doc/style.css

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Fabrice Bellet, Mon May 13 06:28:23 2013