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BEDTools-2.15.0-1.fc15 RPM for i686

From Fedora 15 updates for i386

Name: BEDTools Distribution: Fedora Project
Version: 2.15.0 Vendor: Fedora Project
Release: 1.fc15 Build date: Wed Jan 4 18:47:07 2012
Group: Applications/Engineering Build host: x86-02.phx2.fedoraproject.org
Size: 3546941 Source RPM: BEDTools-2.15.0-1.fc15.src.rpm
Packager: Fedora Project
Url: http://code.google.com/p/bedtools/
Summary: A flexible suite of utilities for comparing genomic features
 
The BEDTools utilities allow one to address common genomics tasks such
as finding feature overlaps and computing coverage. The utilities are
largely based on four widely-used file formats: BED, GFF/GTF, VCF, and
SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that
answer complicated research questions by "streaming" several BEDTools
together.

Provides

Requires

License

GPLv2+

Changelog

* Wed Jan 04 2012 Adam Huffman <verdurin@fedoraproject.org> - 2.15.0-1
  - update to new upstream release 2.15.0
  - new unified command line interface 'bedtools'
  - add python BR for new Makefile target to generate legacy commands
  - remove 'overlap'
  - add 'bedpeToBam', 'clusterBed', 'getOverlap', 'groupBy'
  - add 'multiIntersectBed', 'windowMaker'
* Fri Oct 28 2011 Adam Huffman <bloch@verdurin.com> - 2.13.4-1
  - new upstream minor bugfix release, see http://code.google.com/p/bedtools/
* Thu Sep 08 2011 Adam Huffman <bloch@verdurin.com> - 2.13.1-1
  - new upstream minor release including fixes for tagBam
* Tue Sep 06 2011 Adam Huffman <bloch@verdurin.com> - 2.13.0-1
  - new upstream release 2.13.0
  - new tools tagBam and nucBed
* Tue Apr 12 2011 Adam Huffman <bloch@verdurin.com> - 2.12.0-1
  - new upstream release 2.12.0
  - new tools cuffToTrans and flankBed
* Thu Feb 17 2011 Adam Huffman <bloch@verdurin.com> - 2.11.2-1
  - new upstream release
  - now README.rst
  - remove groupBy command, now in filo
  - new fjoin command
* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.10.1-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
* Wed Nov 17 2010 Adam Huffman <bloch@verdurin.com> - 2.10.1-1
  - new annotateBed tool
  - updated manual
* Sun Sep 12 2010 Adam Huffman <bloch@verdurin.com> - 2.9.0-5
  - add license for -docs
* Wed Sep 01 2010 Adam Huffman <bloch@verdurin.com> - 2.9.0-4
  - add -docs subpackage including PDF manual
* Tue Aug 31 2010 Adam Huffman <bloch@verdurin.com> - 2.9.0-3
  - remove 'curl' library properly
* Tue Aug 31 2010 Adam Huffman <bloch@verdurin.com> - 2.9.0-2
  - fix license and add LICENSE file
  - fix permissions of data/
  - remove bundled 'curl' library
* Wed Aug 25 2010 Adam Huffman <bloch@verdurin.com> - 2.9.0-1
  - new upstream release
  - add new unionBedGraphs tool
* Mon Aug 02 2010 Adam Huffman <bloch@verdurin.com> - 2.8.3-1
  - initial version
  - override upstream CFLAGS
  - allow including gzstream header file

Files

/usr/bin/annotateBed
/usr/bin/bamToBed
/usr/bin/bed12ToBed6
/usr/bin/bedToBam
/usr/bin/bedToIgv
/usr/bin/bedpeToBam
/usr/bin/bedtools
/usr/bin/closestBed
/usr/bin/clusterBed
/usr/bin/complementBed
/usr/bin/coverageBed
/usr/bin/fastaFromBed
/usr/bin/flankBed
/usr/bin/genomeCoverageBed
/usr/bin/getOverlap
/usr/bin/groupBy
/usr/bin/intersectBed
/usr/bin/linksBed
/usr/bin/maskFastaFromBed
/usr/bin/mergeBed
/usr/bin/multiBamCov
/usr/bin/multiIntersectBed
/usr/bin/nucBed
/usr/bin/pairToBed
/usr/bin/pairToPair
/usr/bin/shuffleBed
/usr/bin/slopBed
/usr/bin/sortBed
/usr/bin/subtractBed
/usr/bin/tagBam
/usr/bin/unionBedGraphs
/usr/bin/windowBed
/usr/bin/windowMaker
/usr/share/BEDTools
/usr/share/BEDTools/data
/usr/share/BEDTools/data/knownGene.hg18.chr21.bed
/usr/share/BEDTools/data/rmsk.hg18.chr21.bed
/usr/share/BEDTools/genomes
/usr/share/BEDTools/genomes/human.hg18.genome
/usr/share/BEDTools/genomes/human.hg19.genome
/usr/share/BEDTools/genomes/mouse.mm8.genome
/usr/share/BEDTools/genomes/mouse.mm9.genome
/usr/share/doc/BEDTools-2.15.0
/usr/share/doc/BEDTools-2.15.0/LICENSE
/usr/share/doc/BEDTools-2.15.0/README.rst
/usr/share/doc/BEDTools-2.15.0/RELEASE_HISTORY

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Fabrice Bellet, Mon May 13 06:28:23 2013