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Name: fastx_toolkit | Distribution: Fedora Project |
Version: 0.0.14 | Vendor: Fedora Project |
Release: 31.fc38 | Build date: Thu Jan 19 04:45:37 2023 |
Group: Unspecified | Build host: buildvm-s390x-24.s390.fedoraproject.org |
Size: 489422 | Source RPM: fastx_toolkit-0.0.14-31.fc38.src.rpm |
Packager: Fedora Project | |
Url: http://hannonlab.cshl.edu/fastx_toolkit/index.html | |
Summary: Tools to process short-reads FASTA/FASTQ files |
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. Next-Generation sequencing machines usually produce FASTA or FASTQ files, containing multiple short-reads sequences (possibly with quality information). The main processing of such FASTA/FASTQ files is mapping (aka aligning) the sequences to reference genomes or other databases using specialized programs. Example of such mapping programs are: Blat, SHRiMP, LastZ, MAQ and many many others. However, It is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome - manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks.
AGPLv3+
* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-31 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-30 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-29 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-28 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-27 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
/usr/bin/fasta_clipping_histogram.pl /usr/bin/fasta_formatter /usr/bin/fasta_nucleotide_changer /usr/bin/fastq_masker /usr/bin/fastq_quality_boxplot_graph.sh /usr/bin/fastq_quality_converter /usr/bin/fastq_quality_filter /usr/bin/fastq_quality_trimmer /usr/bin/fastq_to_fasta /usr/bin/fastx_artifacts_filter /usr/bin/fastx_barcode_splitter.pl /usr/bin/fastx_clipper /usr/bin/fastx_collapser /usr/bin/fastx_nucleotide_distribution_graph.sh /usr/bin/fastx_nucleotide_distribution_line_graph.sh /usr/bin/fastx_quality_stats /usr/bin/fastx_renamer /usr/bin/fastx_reverse_complement /usr/bin/fastx_trimmer /usr/bin/fastx_uncollapser /usr/lib/.build-id /usr/lib/.build-id/10 /usr/lib/.build-id/10/adbcbeb0490cc2dba4470a8b29a3b9e96c72b1 /usr/lib/.build-id/25 /usr/lib/.build-id/25/f818364d2ee3890e336656efae223d9166bf38 /usr/lib/.build-id/34 /usr/lib/.build-id/34/3472903be3bdf9cce5ad3f88e3c80ce2a71963 /usr/lib/.build-id/35 /usr/lib/.build-id/35/b98cfc67ee63310d8a441512216bfb21d620be /usr/lib/.build-id/51 /usr/lib/.build-id/51/149614a2531ac55f7bf4cb42a20869cdf07947 /usr/lib/.build-id/5b /usr/lib/.build-id/5b/8ae42d52fa7a3f1ef2a9048b3ff078f676dc18 /usr/lib/.build-id/62 /usr/lib/.build-id/62/4391eb7c366b2c2253cfff107d0e5cb506dd4b /usr/lib/.build-id/80 /usr/lib/.build-id/80/48fec128f1a604f61d4448cb5ce099acd0f47c /usr/lib/.build-id/99 /usr/lib/.build-id/99/c1b8112d5009d6adb9a3a8029ddf2d46574374 /usr/lib/.build-id/c1 /usr/lib/.build-id/c1/86133acb67218d3d0b70a9e49eec1efa7ded08 /usr/lib/.build-id/c2 /usr/lib/.build-id/c2/5a3baef86ebf858715a6a597721569996a323f /usr/lib/.build-id/d8 /usr/lib/.build-id/d8/ec1ee5ea87ff05186be10dc0946f79b181f889 /usr/lib/.build-id/dd /usr/lib/.build-id/dd/55a667ac7f0fd63f78afdde81ba05c9f3aa686 /usr/lib/.build-id/e2 /usr/lib/.build-id/e2/ddf2945e10d60b01a6f5ce5a47623ca8eeb673 /usr/lib/.build-id/e4 /usr/lib/.build-id/e4/4a73d621e6c34d93ffb4641f0935bebe0bef76 /usr/share/doc/fastx_toolkit /usr/share/doc/fastx_toolkit/AUTHORS /usr/share/doc/fastx_toolkit/COPYING /usr/share/doc/fastx_toolkit/NEWS /usr/share/doc/fastx_toolkit/README /usr/share/doc/fastx_toolkit/THANKS
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Fabrice Bellet, Thu May 9 22:39:31 2024