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Name: fastx_toolkit | Distribution: Fedora Project |
Version: 0.0.14 | Vendor: Fedora Project |
Release: 30.fc37 | Build date: Thu Jul 21 04:59:46 2022 |
Group: Unspecified | Build host: buildvm-x86-25.iad2.fedoraproject.org |
Size: 475358 | Source RPM: fastx_toolkit-0.0.14-30.fc37.src.rpm |
Packager: Fedora Project | |
Url: http://hannonlab.cshl.edu/fastx_toolkit/index.html | |
Summary: Tools to process short-reads FASTA/FASTQ files |
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. Next-Generation sequencing machines usually produce FASTA or FASTQ files, containing multiple short-reads sequences (possibly with quality information). The main processing of such FASTA/FASTQ files is mapping (aka aligning) the sequences to reference genomes or other databases using specialized programs. Example of such mapping programs are: Blat, SHRiMP, LastZ, MAQ and many many others. However, It is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome - manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks.
AGPLv3+
* Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-30 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-29 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-28 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-27 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Wed Aug 26 2020 Jeff Law <law@redhat.com> - 0.0.14-26 - No longer force C++11 mode * Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-25 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
/usr/bin/fasta_clipping_histogram.pl /usr/bin/fasta_formatter /usr/bin/fasta_nucleotide_changer /usr/bin/fastq_masker /usr/bin/fastq_quality_boxplot_graph.sh /usr/bin/fastq_quality_converter /usr/bin/fastq_quality_filter /usr/bin/fastq_quality_trimmer /usr/bin/fastq_to_fasta /usr/bin/fastx_artifacts_filter /usr/bin/fastx_barcode_splitter.pl /usr/bin/fastx_clipper /usr/bin/fastx_collapser /usr/bin/fastx_nucleotide_distribution_graph.sh /usr/bin/fastx_nucleotide_distribution_line_graph.sh /usr/bin/fastx_quality_stats /usr/bin/fastx_renamer /usr/bin/fastx_reverse_complement /usr/bin/fastx_trimmer /usr/bin/fastx_uncollapser /usr/lib/.build-id /usr/lib/.build-id/0a /usr/lib/.build-id/0a/26cbfe26a22e6855e10b0ec4bb380fae22ca75 /usr/lib/.build-id/0d /usr/lib/.build-id/0d/4e551ca51dacd7982f88e4d2cf80eb1e4c842f /usr/lib/.build-id/1b /usr/lib/.build-id/1b/528f84bd1d2e4cdbae920c827af03bf5d972d7 /usr/lib/.build-id/1f /usr/lib/.build-id/1f/dfdb16ac715068fe2edbddba3475e7b19caa62 /usr/lib/.build-id/20 /usr/lib/.build-id/20/c1a0075e6c8b07e38d7be633daef6a455ad6c6 /usr/lib/.build-id/4c /usr/lib/.build-id/4c/1c186b85bf1a5450d22a9c414e1849aba12314 /usr/lib/.build-id/72 /usr/lib/.build-id/72/068681513a708e90ff5dbcf76c8f0e1afac7b2 /usr/lib/.build-id/9c /usr/lib/.build-id/9c/a396a6d55664c2ed8534d017d58bea3de3099b /usr/lib/.build-id/9f /usr/lib/.build-id/9f/996d30c2a777c8ac4e47d3f6bf04ff40ff5b80 /usr/lib/.build-id/a6 /usr/lib/.build-id/a6/17152c9c006363e714d88dd602828a92597765 /usr/lib/.build-id/aa /usr/lib/.build-id/aa/1884b301cd45097179d3a2d361e53fde01afd1 /usr/lib/.build-id/ae /usr/lib/.build-id/ae/51db8ecf53dbfe2347601846e64aa6053bfb80 /usr/lib/.build-id/df /usr/lib/.build-id/df/2e0ee27a502d4f666fc12171e0a370ca3a93f5 /usr/lib/.build-id/f7 /usr/lib/.build-id/f7/5c8f4b4efb07bbd3f5c205dcbfca4c7f9f98ef /usr/lib/.build-id/fc /usr/lib/.build-id/fc/d28d3795d27132599b211a6bd17837e8a3ddf1 /usr/share/doc/fastx_toolkit /usr/share/doc/fastx_toolkit/AUTHORS /usr/share/doc/fastx_toolkit/COPYING /usr/share/doc/fastx_toolkit/NEWS /usr/share/doc/fastx_toolkit/README /usr/share/doc/fastx_toolkit/THANKS
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Fabrice Bellet, Thu May 9 19:58:19 2024